March 2nd and 9th 2022

sdmTMB:

https://github.com/pbs-assess/sdmTMB

https://pbs-assess.github.io/sdmTMB/index.html

Slides:

  1. Introduction to random fields

  2. Introduction to sdmTMB

  3. Tree spatial modelling example

  4. Pacific Cod spatiotemporal example

  5. Troubleshooting, tips, and tricks

  6. Presence-only models

  7. Time-varying coefficients

  8. Spatially varying coefficients

  9. Comparing models

  10. Forecasting

  11. Physical barriers

  12. Priors and bounds

Shared Google Docs notes and questions

Week 1: https://docs.google.com/document/d/1MxjLJ4Kz5ASIT15RQWApuf5xI1k-IHFTfd__rHAyuOM/edit#

Week 2: https://docs.google.com/document/d/1j35twC1pwjCU8FEyxlAg_62ce-1icQc9XLIXJcSz-EU/edit#

Draft manuscript:

Dropbox folder

Optional exercise:

https://github.com/pbs-assess/sdmTMB-teaching/blob/main/noaa-psaw-2022/exercise-1.R

GitHub folder for these slides:

https://github.com/pbs-assess/sdmTMB-teaching