Function reference • gfplot

All functions
`assign_areas()`	Assign areas
`bind_samples()`	Join survey and commercial samples
`fit_cpue_index_glmmtmb()` `predict_cpue_index_tweedie()`	Fit CPUE with glmmTMB
`fit_inla()`	Fit a spatial model with INLA
`fit_length_weight()`	Fit a length-weight model
`fit_vb()`	Fit a von Bertalanffy growth model
`get_cpue_historical()`	Get all fishing catch and effort to calculate historical commercial CPUE
`get_ssids()` `get_major_areas()` `get_management_areas()` `get_fishery_ids()` `get_species_groups()` `get_gear_types()` `get_age_methods()` `get_species()` `get_sensor_attributes()` `get_other_surveys()` `get_survey_sets()` `get_survey_samples()` `get_commercial_samples()` `get_catch()` `get_hake_catch()` `get_cpue_spatial()` `get_cpue_spatial_ll()` `get_cpue_index()` `get_age_precision()` `get_survey_index()` `get_sensor_data_trawl()` `get_sensor_data_fe_trawl()` `get_sensor_data_ll_td()` `get_sensor_data_ll_td()` `get_management()` `get_sara_dat()` `cache_pbs_data()`	Get PBS data
`gfplot`	gfplot package
`hbll_grid`	A 2km x 2km grid for the HBLL survey
`hbll_n_grid`	A 2km x 2km grid for the HBLL North survey
`hbll_s_grid`	A 2km x 2km grid for the HBLL South survey
`inject_filter()`	gfplot utilities
`pbs_areas`	PBS groundfish areas
`pbs_species`	PBS groundfish species
`plot_age_precision()`	Plot ageing precision data
`plot_ages()`	Plot age frequency data
`tidy_catch()` `plot_catch()`	Plot catch data over time
`plot_cpue_spatial()`	Plot a map of commercial CPUE
`plot_growth()` `plot_vb()` `plot_length_weight()`	Plot von Bertalanffy or length-weight fits
`plot_lengths()`	Plot length frequency data
`fit_mat_ogive()` `plot_mat_ogive()`	Fit and plot maturity ogives
`tidy_maturity_months()` `plot_maturity_months()`	Plot maturity frequency by month
`plot_predictor_bubbles()`	Make predictor level bubble plots
`plot_sample_avail()`	Plot sample availability
`tidy_survey_index()` `plot_survey_index()`	Plot survey relative biomass mass index
`plot_survey_sets()`	Plot the output from a geostatistical model of survey data
`pop_samples`	Example Pacific Ocean Perch biological samples from QCS.
`pop_surv`	Example Pacific Ocean Perch survey data from QCS in 2015
`qres_tweedie()` `qres_binomial()` `qres_gamma()` `qres_gaussian()` `plot_qres_qq()` `plot_qres_histogram()`	Quantile residuals for a Tweedie GLMM fit with glmmTMB
`run_sql()`	Run SQL
`fit_survey_sets()`	Spatial modeling of survey data
`survey_boundaries`	Survey boundaries
`theme_pbs()`	A ggplot2 theme
`tidy_age_precision()`	Tidy PBS ageing precision data
`tidy_ages_raw()` `tidy_ages_weighted()` `tidy_lengths_raw()` `tidy_lengths_weighted()` `tidy_comps()`	Tidy age or length composition data for plotting or modelling
`tidy_cpue_historical()`	Tidy historical CPUE data
`tidy_cpue_index()`	Tidy commercial PBS CPUE data
`tidy_sample_avail()`	Tidy PBS samples data for `plot_sample_avail()`
`tidy_survey_sets()`	Tidy the survey set data for use in modeling
`tidy_comps_commercial()` `tidy_comps_survey()` `weight_comps()`	Age and length frequency weighting

Reference

All functions

Contents