All functions

add_barrier_mesh()

Transform a mesh object into a barrier mesh object

bc_coast

BC coastline data from ropensci/rnaturalearthhires

Beta() lognormal() nbinom2() student() tweedie()

Additional families

get_index() get_cog()

Extract a relative biomass/abundance index or a center of gravity

make_mesh() plot(<sdmTMBmesh>)

Construct an SPDE mesh for sdmTMB

make_spde() plot_spde()

Construct an SPDE mesh (depreciated)

pcod

Example data for Pacific Cod

plot_anisotropy()

Plot anisotropy

predict(<sdmTMB>)

Predict from an sdmTMB model

qcs_grid

Example 2x2km prediction grid for Queen Charlotte Sound

run_extra_optimization()

Run extra optimization on an already fitted object

sdmTMB()

Fit a spatial or spatiotemporal GLMM with TMB

sdmTMB_cv()

Save log likelihoods of k-fold cross-validation for sdmTMB models

sdmTMB_sim()

Simulate from a spatial/spatiotemporal model

sdmTMBcontrol()

Optimization control options

tidy(<sdmTMB>)

Turn sdmTMB model output into a tidy data frame