All functions |
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Transform a mesh object into a barrier mesh object |
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Add UTM coordinates to a data frame |
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BC coastline data from ropensci/rnaturalearthhires |
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Get DHARMa residuals |
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Extract MCMC samples from a model fit with |
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Additional families |
Extract parameter simulations from the joint precision matrix |
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Extract a relative biomass/abundance index or a center of gravity |
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Calculate a population index via simulation from the joint precision matrix |
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Construct an SPDE mesh for sdmTMB |
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Example data for Pacific Cod |
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Example data for Pacific Cod (years 2011 and after) |
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Example SPDE mesh for the Pacific Cod data (years 2011 and after) |
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Plot anisotropy |
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Plot PC Matern priors |
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Plot a smooth term from an sdmTMB model |
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Predict from an sdmTMB model |
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Prior distributions |
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Example 2x2km prediction grid for Queen Charlotte Sound |
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Residuals method for sdmTMB models |
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Run extra optimization on an already fitted object |
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Sanity check of sdmTMB model |
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Fit a spatial or spatiotemporal GLMM with TMB |
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Save log likelihoods of k-fold cross-validation for sdmTMB models |
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Simulate from a spatial/spatiotemporal model |
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Simulate from a spatial/spatiotemporal model |
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Perform stacking with log scores on |
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Optimization control options |
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Simulate from a fitted sdmTMB model |
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Turn sdmTMB model output into a tidy data frame |
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Plot sdmTMB models with the visreg package |