Function reference • sdmTMB

All functions
`add_barrier_mesh()`	Transform a mesh object into a barrier mesh object
`bc_coast`	BC coastline data from ropensci/rnaturalearthhires
`extract_mcmc()`	Extract MCMC samples from a model fit with `tmbstan::tmbstan()`.
`Beta()` `lognormal()` `nbinom2()` `truncated_nbinom2()` `student()` `tweedie()`	Additional families
`spread_sims()` `gather_sims()`	Extract parameter simulations from the joint precision matrix
`get_index()` `get_cog()`	Extract a relative biomass/abundance index or a center of gravity
`get_index_sims()`	Calculate a population index via simulation from the joint precision matrix
`inla_installed()`	Check if INLA installed (i.e., not on CRAN)
`make_mesh()` `plot(<sdmTMBmesh>)`	Construct an SPDE mesh for sdmTMB
`make_spde()` `plot_spde()`	Construct an SPDE mesh (depreciated)
`pcod`	Example data for Pacific Cod
`pcod_2011`	Example data for Pacific Cod (years 2011 and after)
`pcod_mesh_2011`	Example SPDE mesh for the Pacific Cod data (years 2011 and after)
`plot_anisotropy()`	Plot anisotropy
`predict(<sdmTMB>)`	Predict from an sdmTMB model
`sdmTMBpriors()` `normal()` `halfnormal()` `mvnormal()` `pc_matern()`	Prior distributions
`qcs_grid`	Example 2x2km prediction grid for Queen Charlotte Sound
`residuals(<sdmTMB>)`	Residuals
`run_extra_optimization()`	Run extra optimization on an already fitted object
`sdmTMB()`	Fit a spatial or spatiotemporal GLMM with TMB
`sdmTMB_cv()`	Save log likelihoods of k-fold cross-validation for sdmTMB models
`sdmTMB_sim()`	Simulate from a spatial/spatiotemporal model
`sdmTMBcontrol()`	Optimization control options
`tidy(<sdmTMB>)`	Turn sdmTMB model output into a tidy data frame
`update_model()`	Update an old sdmTMB model

Reference

All functions