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add_barrier_mesh()
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Transform a mesh object into a barrier mesh object |
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bc_coast
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BC coastline data from ropensci/rnaturalearthhires |
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Beta() lognormal() nbinom2() student() tweedie()
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Additional families |
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get_index() get_cog()
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Extract a relative biomass/abundance index or a center of gravity |
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make_mesh() plot(<sdmTMBmesh>)
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Construct an SPDE mesh for sdmTMB |
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make_spde() plot_spde()
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Construct an SPDE mesh (depreciated) |
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pcod
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Example data for Pacific Cod |
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plot_anisotropy()
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Plot anisotropy |
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predict(<sdmTMB>)
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Predict from an sdmTMB model |
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qcs_grid
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Example 2x2km prediction grid for Queen Charlotte Sound |
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run_extra_optimization()
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Run extra optimization on an already fitted object |
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sdmTMB()
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Fit a spatial or spatiotemporal GLMM with TMB |
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sdmTMB_cv()
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Save log likelihoods of k-fold cross-validation for sdmTMB models |
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sdmTMB_sim()
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Simulate from a spatial/spatiotemporal model |
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sdmTMBcontrol()
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Optimization control options |
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tidy(<sdmTMB>)
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Turn sdmTMB model output into a tidy data frame |